Pumpkin Cream Cheese Muffins

from 8 votes

Ditch the coffee shop snacks in favor of this quick and easy recipe for Pumpkin Cream Cheese Muffins that swirls pumpkin batter and tangy cheesecake filling into every bite.

A muffin tin containing Cream Cheese Pumpkin Muffins

Cream cheese, you complete me. You steal the show in cheesecake. You beautify brownies. (Just look at that swirl in these cheesecake brownie bites!) You kick up coffee cake. You even managed to improve the best chocolate chip cookie recipe of all time. So it should come as no surprise that pumpkin + cream cheese = muffin perfection.

This quick and easy recipe for cream cheese pumpkin muffins is guaranteed to make you pass on the pastry case at your local coffee shop. With plenty of pumpkin purée and pumpkin pie spice, there’s no doubt this is the pumpkin muffin to end all pumpkin muffins. Add a tangy filling that’s quite reminiscent of cheesecake, and we have ourselves a winner.

Batter in a stand mixer bowl with the paddle attachment

How to Make Cream Cheese Filled Pumpkin Muffins

The setup on this one involves luxurious, thick swirls of cheesecake-like filling marbled with pumpkin muffin batter. I’ve made (and re-made) this recipe a hundred times, sometimes piping the cheesecake mixture into the centers of the muffins, other tips alternating scoops of the two batters and swirling them together.

There is no wrong way to marry pumpkin and cheesecake. These are very forgiving batters, so choose your preferred combination method and get ready for double the flavor.

Cupcake liners filled with pumpkin batter

Success Tips & Variations

  • Love a thick cream cheese center? Skip the swirl and pipe the cream cheese filling directly into the middle of each muffin! Just spoon the filling into a piping bag (or a zip-top bag with the tip cut off), and pipe a generous dollop into the center of each muffin before baking.
  • If you really want these to be a Starbucks copycat, sprinkle pumpkin seeds on top before baking. They add a nice crunch and give your muffins that signature, bakery-style look!
  • Craving a plain ol’ pumpkin muffin? Simply skip the cream cheese filling. Or, if you’re a fan of chocolate, be sure to check out my fave pumpkin chocolate chip muffins recipe!
A pumpkin muffin with cream cheese cut in half on a plate

Craving more pumpkin-inspired treats? Don’t miss Pumpkin Banana Bread, Pumpkin Spice Waffles and Pumpkin Cheesecake Pops.

A top-down view of a muffin tin containing freshly baked Cream Cheese Pumpkin Muffins

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Breakfast

Cream Cheese Pumpkin Muffins

Preheat your oven for a quick and easy recipe starring extra-moist pumpkin muffins with a tangy cream cheese filling!
Author: Kelly Senyei
5 from 8 votes
A muffin tin containing Cream Cheese Pumpkin Muffins
Prep Time 15 minutes
Cook Time 20 minutes
Total Time 35 minutes
Servings 16 muffins

Ingredients 

For the muffins:

  • 1 2/3 cups all-purpose flour
  • 1/2 teaspoon baking powder
  • 1 teaspoon baking soda
  • 1/2 teaspoon salt
  • 2 1/2 teaspoons pumpkin pie spice
  • 1/2 cup unsalted butter, at room temperature
  • 1 1/3 cups sugar
  • 1/2 teaspoon vanilla extract
  • 2 large eggs
  • 1 cup canned pumpkin
  • 1/3 cup water

For the cream cheese filling:

  • 1 package cream cheese (8-oz.), at room temperature
  • 2 Tablespoons sugar
  • 1 large egg
  • 1 teaspoon vanilla extract

Instructions 

Make the muffins:

  • Preheat the oven to 350ºF. Line a muffin pan with baking cups.
  • In a large bowl, sift together the flour, baking powder, baking soda, salt and pumpkin pie spice. Set the bowl aside.
  • In the bowl of a stand mixer fitted with the paddle attachment, cream together the butter, sugar and vanilla until light and fluffy, about 2 minutes. Add the eggs, one at a time, then add the pumpkin and mix until combined.
  • Alternately add the dry ingredients and water to the bowl, beginning and ending with the dry ingredients. Blend the batter well, scraping down the sides as needed. Set the batter aside.

Make the cream cheese filling:

  • In the bowl of a stand mixer fitted with the paddle attachment, beat together the cream cheese, sugar, egg and vanilla.
  • Alternately add dollops of the pumpkin batter and cream cheese filling into the muffin cups, filling each ¾ full. Using a toothpick or sharp knife, swirl together the mixture.
  • Bake the muffins for 20 to 25 minutes or until a toothpick inserted comes out clean. Allow the muffins to cool in the pan for 5 minutes then transfer them to a rack to cool completely.
  • ★ Did you make this recipe? Don't forget to give it a star rating below!

Nutrition

Calories: 188kcal, Carbohydrates: 29g, Protein: 2g, Fat: 6g, Saturated Fat: 3g, Cholesterol: 46mg, Sodium: 155mg, Potassium: 69mg, Sugar: 18g, Vitamin A: 2605IU, Vitamin C: 0.7mg, Calcium: 20mg, Iron: 1mg

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5 from 8 votes (2 ratings without comment)

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Comments

  1. Betty B says:

    5 stars
    I made these, but low cholesterol. Egg beaters for eggs, margerine for butter, neufchatel cream cheese. 2 mg cholesterol per muffin vs 46mg. They came out fine!

    1. Kelly Senyei says:

      Awesome! I’m so glad you enjoyed the recipe, Betty!

  2. Krystie says:

    If I want to use real pumpkin and not canned what do you suggest?

    1. Kelly Senyei says:

      Hi Krystie! I’ve never tried this recipe using fresh/roasted pumpkin, but I think you’d want to really drain out any excess moisture. Let me know if you give it a shot!

  3. Katja says:

    Hi Kelly, as it’s hard to get cans of pumpkin puree here in Germany, do you think pumpkin puree from the baby food section would work the same? Thanks! Katja

    1. Kelly Senyei says:

      That just might work, Katja! Let me know if you give it a shot!

      1. Katja says:

        5 stars
        … tried it today with baby food (pure pumpkin) and it worked very well. ;)

      2. Kelly Senyei says:

        Woohoo! I’m so glad it worked out, Katja!

  4. Cindy says:

    5 stars
    So beautiful and delicious! Thank you!

    1. Kelly Senyei says:

      You’re so welcome, Cindy! I’m thrilled you enjoyed the recipe!

  5. Lucille says:

    5 stars
    These are delicious and easy to make. My grandson loves them for breakfast.

    1. Kelly Senyei says:

      I’m so thrilled to read this, Lucille!

  6. Diane says:

    5 stars
    I made the recipe as written but replaced the wheat flour with King Arthur gluten free flour. Butter was my shortening. I used whole milk in place of the water. Part way through the baking, my oven failed. I cooked these in a slow oven for a very long time, then finished them with the broiler. They came out perfect – not dry and not doughy. I will definitely make again!

    1. Kelly Senyei says:

      Wow! I’m so glad you enjoyed the recipe, Diane!

  7. DonnaAnderson says:

    would love this in chocolate muffins…..would it work the same?

    1. Kelly Senyei says:

      Sure!

  8. Lesley says:

    5 stars
    It’s August but my family wanted something pumpkin so I made these muffins. They were delicious!

  9. trina says:

    We love these!! My family always asks me to make these. I was curious, do you know how long you would cook them if you made them in a mini muffin tin? Thanks for an awesome recipe!!

    1. Kelly Senyei says:

      Hi Trina! I have never made mini muffins with this recipe so unfortunately, I’m not certain on the bake time. So glad you and your family have been enjoying them!

  10. Iva says:

    I made these into four mini loaves it was great….I whipped the entire batter at the end in the mixer and it made a treat texture!!! The cream cheese filling was great….and I also added the one third cup of water even if I didn’t blend…added pumpkin seeds over the top…awesome!

    1. Kelly Senyei says:

      So glad you enjoyed the recipe, Iva!

  11. Lisa savage says:

    Theses look so yummy I want to try this receipes. I made cream cheese muffins with th cream cheese in the batter and made half with mini chocolate chips. I want to try these muffins with a cream cheese in the center❤️

  12. Laila says:

    I made the muffins using fresh pumpkin, I live in Jamaica and the supermarkets don’t sell canned pumpkin. To spice the pumpkin I boiled it with cinnamon sticks and then used nutmeg and cinnamon as my “pumpkin spice.” They were amazing! But wasn’t sure if I should leave them out or refrigerate them since they had the cream cheese.
    Thanks for the recipe!

  13. Bec says:

    Can I use fresh or roasted pumpkin instead of tinned? Would I have to change the amount?

    1. Kelly Senyei says:

      Hi Bec! I’ve never tried this recipe for fresh/roasted pumpkin, but I think you’d want to really drain out any excess moisture.

  14. Nicole says:

    What if you don’t have a paddle attachment for your stand mixer?

    1. Kelly Senyei says:

      Hi Nicole! You could try using the whisk, but you just want to make not to overbeat the mixture.

  15. Lana says:

    How many ounces of the canned pumpkin?

  16. julie says:

    Can not wait to make them. Looks delicious.

  17. Melissa says:

    Cannot get any better than pumpkin cheesecake in muffin form!

    1. Kelly Senyei says:

      I 100% agree, Melissa :)

  18. Stephanie Mormina says:

    Oops, just saw the previous question. Thanks!

    1. Kelly Senyei says:

      No prob! Enjoy :)

  19. Stephanie Mormina says:

    Hey Kelly,

    I’ll be making these today. I imagine you need to refrigerate them because of the cheesecake, right?

    Thanks!
    Steph

  20. Tina says:

    For storage, do they need to be refrigerated?

    1. Kelly Senyei says:

      Just to be extra-safe, I’d say yes!

  21. Amanda says:

    I love everything about these!! Fabulous recipe!

  22. Jessica says:

    Made these tonight, and they were delicious! Not too sweet, a little veggie, a little extra protein…dare I say healthy?

    Just a heads up, in the directions for combining the dry ingredients, it should include salt.

    I love everything I’ve ever made from your recipes–they’re always a big hit!

    1. Kelly Senyei says:

      Thanks so much for letting me know, Jessica! Recipe has been updated :) So glad you enjoyed the muffins!

  23. Mary @chattavore says:

    Oh, yum Kelly! These look absolutely amazing. I have some pumpkin in the pantry…looks like these need to be on the menu for next week!

    By the way, I loved listening to you on the FoodBlogger Pro Podcast! Thanks for sharing your insight!!

    1. Kelly Senyei says:

      Thanks so much, Mary! I’m so glad you enjoyed the podcast :)

  24. Yasmin says:

    Thank you so much for this recipe, my daughter is gona loooove this so much. She’s a pumpkin spice everything lover. Plus she enjoys baking.

    1. Kelly Senyei says:

      Awesome! I hope you enjoy it, Yasmin!

  25. Tonya says:

    My little “pumpkin” would love these!

    1. Kelly Senyei says:

      Hah! I hope so :)

  26. Tori says:

    Yes please! I could eat a whole tray of these gorgeous creations!

    1. Kelly Senyei says:

      Thanks, Tori!

  27. June @ How to Philosophize with Cake says:

    Wow those look like some amazing muffins! That cream cheese filling is calling my name :)

    1. Kelly Senyei says:

      Thanks so much, June!